[statnet_help] ERGM error
Khanna, Aditya
aditya_khanna at brown.edu
Fri Oct 27 05:44:43 PDT 2023
Thanks Michal! I had installed the languageserver and httpgd packages to
use the vscode extension for R. I haven’t install them in my fresh
environment that is working.
Aditya
On Fri, Oct 27, 2023 at 7:13 AM Michał Bojanowski <michal2992 at gmail.com>
wrote:
> Dear Aditya,
>
> Yeah, running old versions of the Statnet in an even older version of
> R might be tricky... It's strange that suddenly stopped working
> though, given that you managed the environment with 'renv'. You must
> have updated something, right?
>
> It was all already some time but I believe the issues might be related
> to the rle functionality which for the moment was part of
> statnet.common (or ergm) and was later externalized to a separate
> package 'rle'.
>
> I'm glad that all worked-out in the end.
>
> Best,
> Michal
>
> On Thu, Oct 26, 2023 at 5:43 PM Aditya Khanna <aditya_khanna at brown.edu>
> wrote:
> >
> > Hi All,
> >
> > I created the environment again with a fresh install of the package
> versions I am using. The flomarriage example and my own code are both
> working now.
> > Aditya
> >
> > On Oct 25, 2023, at 4:06 PM, Khanna, Aditya <aditya_khanna at brown.edu>
> wrote:
> >
> > Hello Statnet Dev Team and All,
> >
> > I have some code for an ERGM that I developed in v 3.10.4 (and R 3.6.0).
> I didn't upgrade it to the latest ERGM because it had a custom term and
> used a very large underlying dataset. Until recently, the code and the
> environment both worked just fine, I periodically re-ran the code on new
> data as updates were needed.
> >
> > Today I tried to run the code again, but it, and simpler versions of the
> ERGM (i.e., a model as simple as just including the edges term), but all
> failed. I then tried running a standard tutorial example, and it produces
> the same error:
> >
> > > data(florentine)
> > > summary(flomarriage ~ edges)
> > edges
> > 20
> > > ergm(formula = flomarriage ~ edges)
> > Error in rep(rle(v), r, scale = "run") : invalid 'times' argument
> > >
> >
> > I have been managing the project using renv, so I don't know what
> underlying thing might have changed.I would be grateful for any thoughts on
> how to debug this. The sessionInfo() is included below.
> > Aditya
> >
> > > sessionInfo()
> > R version 3.6.0 (2019-04-26)
> > Platform: x86_64-pc-linux-gnu (64-bit)
> > Running under: Red Hat Enterprise Linux Server 7.9 (Maipo)
> >
> > Matrix products: default
> > BLAS/LAPACK:
> /oscar/rt/7.2/opt/intel/2017.0/compilers_and_libraries_2017.0.098/linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so
> >
> > locale:
> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> > [9] LC_ADDRESS=C LC_TELEPHONE=C
> > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> >
> > attached base packages:
> > [1] stats graphics grDevices datasets utils methods base
> >
> > other attached packages:
> > [1] here_1.0.1 ergm.userterms_3.1.1 statnet.common_4.7.0
> > [4] dplyr_1.1.0 ergm_3.10.4 network_1.18.1
> >
> > loaded via a namespace (and not attached):
> > [1] magrittr_2.0.3 MASS_7.3-51.4 tidyselect_1.2.0
> lattice_0.20-38
> > [5] R6_2.5.1 rlang_1.1.1 fansi_1.0.4 tools_3.6.0
> > [9] parallel_3.6.0 grid_3.6.0 lpSolve_5.6.18 utf8_1.2.3
> > [13] cli_3.6.0 coda_0.19-4 withr_2.5.0
> rprojroot_2.0.3
> > [17] tibble_3.1.8 lifecycle_1.0.3 Matrix_1.2-17 purrr_1.0.1
> > [21] vctrs_0.5.2 trust_0.1-8 robustbase_0.95-0 glue_1.6.2
> > [25] DEoptimR_1.0-11 compiler_3.6.0 pillar_1.8.1 generics_0.1.3
> > [29] jsonlite_1.8.7 renv_1.0.0 pkgconfig_2.0.3
> > >
> >
> >
> > _______________________________________________
> > statnet_help mailing list
> > statnet_help at u.washington.edu
> > http://mailman13.u.washington.edu/mailman/listinfo/statnet_help
>
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