[statnet_help] ERGM error

Khanna, Aditya aditya_khanna at brown.edu
Fri Oct 27 05:44:43 PDT 2023


Thanks Michal! I had installed the languageserver and httpgd packages to
use the vscode extension for R. I haven’t install them in my fresh
environment that is working.

Aditya

On Fri, Oct 27, 2023 at 7:13 AM Michał Bojanowski <michal2992 at gmail.com>
wrote:


> Dear Aditya,

>

> Yeah, running old versions of the Statnet in an even older version of

> R might be tricky... It's strange that suddenly stopped working

> though, given that you managed the environment with 'renv'. You must

> have updated something, right?

>

> It was all already some time but I believe the issues might be related

> to the rle functionality which for the moment was part of

> statnet.common (or ergm) and was later externalized to a separate

> package 'rle'.

>

> I'm glad that all worked-out in the end.

>

> Best,

> Michal

>

> On Thu, Oct 26, 2023 at 5:43 PM Aditya Khanna <aditya_khanna at brown.edu>

> wrote:

> >

> > Hi All,

> >

> > I created the environment again with a fresh install of the package

> versions I am using. The flomarriage example and my own code are both

> working now.

> > Aditya

> >

> > On Oct 25, 2023, at 4:06 PM, Khanna, Aditya <aditya_khanna at brown.edu>

> wrote:

> >

> > Hello Statnet Dev Team and All,

> >

> > I have some code for an ERGM that I developed in v 3.10.4 (and R 3.6.0).

> I didn't upgrade it to the latest ERGM because it had a custom term and

> used a very large underlying dataset. Until recently, the code and the

> environment both worked just fine, I periodically re-ran the code on new

> data as updates were needed.

> >

> > Today I tried to run the code again, but it, and simpler versions of the

> ERGM (i.e., a model as simple as just including the edges term), but all

> failed. I then tried running a standard tutorial example, and it produces

> the same error:

> >

> > > data(florentine)

> > > summary(flomarriage ~ edges)

> > edges

> > 20

> > > ergm(formula = flomarriage ~ edges)

> > Error in rep(rle(v), r, scale = "run") : invalid 'times' argument

> > >

> >

> > I have been managing the project using renv, so I don't know what

> underlying thing might have changed.I would be grateful for any thoughts on

> how to debug this. The sessionInfo() is included below.

> > Aditya

> >

> > > sessionInfo()

> > R version 3.6.0 (2019-04-26)

> > Platform: x86_64-pc-linux-gnu (64-bit)

> > Running under: Red Hat Enterprise Linux Server 7.9 (Maipo)

> >

> > Matrix products: default

> > BLAS/LAPACK:

> /oscar/rt/7.2/opt/intel/2017.0/compilers_and_libraries_2017.0.098/linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so

> >

> > locale:

> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C

> > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8

> > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8

> > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C

> > [9] LC_ADDRESS=C LC_TELEPHONE=C

> > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

> >

> > attached base packages:

> > [1] stats graphics grDevices datasets utils methods base

> >

> > other attached packages:

> > [1] here_1.0.1 ergm.userterms_3.1.1 statnet.common_4.7.0

> > [4] dplyr_1.1.0 ergm_3.10.4 network_1.18.1

> >

> > loaded via a namespace (and not attached):

> > [1] magrittr_2.0.3 MASS_7.3-51.4 tidyselect_1.2.0

> lattice_0.20-38

> > [5] R6_2.5.1 rlang_1.1.1 fansi_1.0.4 tools_3.6.0

> > [9] parallel_3.6.0 grid_3.6.0 lpSolve_5.6.18 utf8_1.2.3

> > [13] cli_3.6.0 coda_0.19-4 withr_2.5.0

> rprojroot_2.0.3

> > [17] tibble_3.1.8 lifecycle_1.0.3 Matrix_1.2-17 purrr_1.0.1

> > [21] vctrs_0.5.2 trust_0.1-8 robustbase_0.95-0 glue_1.6.2

> > [25] DEoptimR_1.0-11 compiler_3.6.0 pillar_1.8.1 generics_0.1.3

> > [29] jsonlite_1.8.7 renv_1.0.0 pkgconfig_2.0.3

> > >

> >

> >

> > _______________________________________________

> > statnet_help mailing list

> > statnet_help at u.washington.edu

> > http://mailman13.u.washington.edu/mailman/listinfo/statnet_help

>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman13.u.washington.edu/pipermail/statnet_help/attachments/20231027/85aea9df/attachment.html>


More information about the statnet_help mailing list